Summary of a cats object
Usage
# S3 method for cats
summary(object, ...)Arguments
- object
a cats object
- ...
Dynamic parameter for the values of additional parameters for the print method
Examples
x <- cats()
summary(x)
#> Options
#> chosen
#> freq 5.00e-01
#> freq2 -1.00e+00
#> ncases 5.00e+02
#> ncontrols 5.00e+02
#> ncases2 5.00e+02
#> ncontrols2 5.00e+02
#> risk 1.50e+00
#> risk2 -1.00e+00
#> pisamples -1.00e+00
#> prevalence 1.00e-01
#> prevalence2 -1.00e+00
#> additive 0.00e+00
#> recessive 0.00e+00
#> dominant 0.00e+00
#> multiplicative 1.00e+00
#> alpha 1.00e-07
#> pimarkers 3.16e-03
#> Recommended thresholds:
#>
#>
#> One stage Design = 5.326724
#> Stage 1 Threshold = 2.951729
#> Replication Threshold = 4.000192
#> Joint Analysis Threshold = 5.30794
#>
#> Eobjectpected disesase allele frequencies
#>
#>
#> Cases in stage 1 = 0.6
#> Controls in stage 1 = 0.4888889
#> Cases in stage 2 = 0.6
#> Controls in stage 2 = 0.4888889
#>
#> Expected Power is:
#>
#>
#> For a one-stage study = 0.962
#> For first stage in two-stage study = 0.981
#> For second stage in replication analysis = 0.83
#> For second stage in a joint analysis = 0.953
#> pi = 0.5
#>