Package index • ssw

Sequence alignment

align(): Perform Smith-Waterman alignment of a read against a reference sequence

force_align(): Perform forced alignment with increased gap open penalty

Print results

print(<ssw>): Print SSW alignment results

formatter(): Format and pretty-print SSW forced alignment results without truncation

Helpers

install_ssw_py(): Install ssw-py and its dependencies

ssw_py: Global reference to ssw-py

is_installed_ssw_py(): Is ssw-py installed?