Retrieve Protein Sequence from RCSB PDB

Retrieve Protein Sequence from RCSB PDB

Usage

getSeqFromRCSBPDB(id, parallel = 5)

Arguments

id

A character vector, as the protein ID.

parallel

An integer, the parallel parameter, indicates how many process the user would like to use for retrieving the data (using RCurl), default is 5. For regular cases, we recommend a number less than 20.

Value

A list, each component contains one of the protein represented by amino acid sequence(s).

Details

This function retrieves protein sequences from RCSB PDB.

See also

See getPDBFromRCSBPDB for retrieving protein in PDB format from the RCSB PDB database.

Examples

id = c('4HHB', '4FF9')
# \donttest{
getSeqFromRCSBPDB(id)# }
#> [[1]]
#> [[1]]$`4HHB_1|Chains`
#> [1] "VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR"
#> 
#> [[1]]$`4HHB_2|Chains`
#> [1] "VHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH"
#> 
#> 
#> [[2]]
#> [[2]]$`4FF9_1|Chains`
#> [1] "ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ"
#> 
#>