CTD Descriptors - Distribution
References
Inna Dubchak, Ilya Muchink, Stephen R. Holbrook and Sung-Hou Kim. Prediction of protein folding class using global description of amino acid sequence. Proceedings of the National Academy of Sciences. USA, 1995, 92, 8700-8704.
Inna Dubchak, Ilya Muchink, Christopher Mayor, Igor Dralyuk and Sung-Hou Kim. Recognition of a Protein Fold in the Context of the SCOP classification. Proteins: Structure, Function and Genetics, 1999, 35, 401-407.
See also
See extractProtCTDC and extractProtCTDT
for the Composition and Transition descriptors.
Examples
x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtCTDD(x)
#> prop1.G1.residue0 prop1.G1.residue25 prop1.G1.residue50 prop1.G1.residue75
#> 0.3558719 23.1316726 50.1779359 73.8434164
#> prop1.G1.residue100 prop1.G2.residue0 prop1.G2.residue25 prop1.G2.residue50
#> 99.8220641 0.5338078 27.4021352 47.3309609
#> prop1.G2.residue75 prop1.G2.residue100 prop1.G3.residue0 prop1.G3.residue25
#> 75.2669039 100.0000000 0.1779359 19.5729537
#> prop1.G3.residue50 prop1.G3.residue75 prop1.G3.residue100 prop2.G1.residue0
#> 51.7793594 75.6227758 99.6441281 0.3558719
#> prop2.G1.residue25 prop2.G1.residue50 prop2.G1.residue75 prop2.G1.residue100
#> 25.6227758 48.0427046 75.4448399 100.0000000
#> prop2.G2.residue0 prop2.G2.residue25 prop2.G2.residue50 prop2.G2.residue75
#> 1.4234875 23.3096085 54.4483986 76.3345196
#> prop2.G2.residue100 prop2.G3.residue0 prop2.G3.residue25 prop2.G3.residue50
#> 99.4661922 0.1779359 22.7758007 48.9323843
#> prop2.G3.residue75 prop2.G3.residue100 prop3.G1.residue0 prop3.G1.residue25
#> 69.5729537 99.8220641 0.1779359 20.9964413
#> prop3.G1.residue50 prop3.G1.residue75 prop3.G1.residue100 prop3.G2.residue0
#> 50.8896797 74.5551601 99.6441281 0.5338078
#> prop3.G2.residue25 prop3.G2.residue50 prop3.G2.residue75 prop3.G2.residue100
#> 26.5124555 46.2633452 75.4448399 100.0000000
#> prop3.G3.residue0 prop3.G3.residue25 prop3.G3.residue50 prop3.G3.residue75
#> 0.3558719 24.1992883 50.5338078 73.8434164
#> prop3.G3.residue100 prop4.G1.residue0 prop4.G1.residue25 prop4.G1.residue50
#> 99.8220641 0.3558719 26.5124555 48.3985765
#> prop4.G1.residue75 prop4.G1.residue100 prop4.G2.residue0 prop4.G2.residue25
#> 76.1565836 99.2882562 1.4234875 21.5302491
#> prop4.G2.residue50 prop4.G2.residue75 prop4.G2.residue100 prop4.G3.residue0
#> 51.4234875 75.8007117 100.0000000 0.1779359
#> prop4.G3.residue25 prop4.G3.residue50 prop4.G3.residue75 prop4.G3.residue100
#> 22.7758007 48.9323843 69.5729537 99.8220641
#> prop5.G1.residue0 prop5.G1.residue25 prop5.G1.residue50 prop5.G1.residue75
#> 0.8896797 20.8185053 48.9323843 69.5729537
#> prop5.G1.residue100 prop5.G2.residue0 prop5.G2.residue25 prop5.G2.residue50
#> 99.8220641 0.1779359 24.9110320 49.1103203
#> prop5.G2.residue75 prop5.G2.residue100 prop5.G3.residue0 prop5.G3.residue25
#> 75.2669039 100.0000000 0.3558719 26.1565836
#> prop5.G3.residue50 prop5.G3.residue75 prop5.G3.residue100 prop6.G1.residue0
#> 64.2348754 77.4021352 99.2882562 0.1779359
#> prop6.G1.residue25 prop6.G1.residue50 prop6.G1.residue75 prop6.G1.residue100
#> 22.9537367 50.8896797 74.3772242 99.8220641
#> prop6.G2.residue0 prop6.G2.residue25 prop6.G2.residue50 prop6.G2.residue75
#> 1.6014235 21.5302491 49.2882562 70.8185053
#> prop6.G2.residue100 prop6.G3.residue0 prop6.G3.residue25 prop6.G3.residue50
#> 98.9323843 0.3558719 29.0035587 48.2206406
#> prop6.G3.residue75 prop6.G3.residue100 prop7.G1.residue0 prop7.G1.residue25
#> 77.4021352 100.0000000 0.5338078 23.4875445
#> prop7.G1.residue50 prop7.G1.residue75 prop7.G1.residue100 prop7.G2.residue0
#> 50.0000000 74.5551601 98.9323843 0.3558719
#> prop7.G2.residue25 prop7.G2.residue50 prop7.G2.residue75 prop7.G2.residue100
#> 23.1316726 50.1779359 73.8434164 99.8220641
#> prop7.G3.residue0 prop7.G3.residue25 prop7.G3.residue50 prop7.G3.residue75
#> 0.1779359 27.2241993 48.0427046 75.4448399
#> prop7.G3.residue100
#> 100.0000000