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Calculate the PubChem Molecular Fingerprints (in Compact Format)

Source: R/377-extractDrugPubChem.R
extractDrugPubChem.Rd

Calculate the PubChem Molecular Fingerprints (in Compact Format)

Usage

extractDrugPubChem(molecules, silent = TRUE)

Arguments

molecules

Parsed molucule object.

silent

Logical. Whether the calculating process should be shown or not, default is TRUE.

Value

A list, each component represents one of the molecules, each element in the component represents the index of which element in the fingerprint is 1. Each component's name is the length of the fingerprints.

Details

Calculate the 881 bit fingerprints defined by PubChem.

See also

extractDrugPubChemComplete

Examples

smi = system.file('vignettedata/FDAMDD.smi', package = 'Rcpi')
# \donttest{
mol = readMolFromSmi(smi, type = 'mol')
#> Error in parseSmiles(smi): The package "rcdk" is required to parse SMILES
fp  = extractDrugPubChem(mol)
#> Error in eval(expr, envir, enclos): object 'mol' not found
head(fp)# }
#> Error in eval(expr, envir, enclos): object 'fp' not found