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Q9HC16

DNA dC->dU-editing enzyme APOBEC-3G


Function

DNA deaminase (cytidine deaminase) which acts as an inhibitor of retrovirus replication and retrotransposon mobility via deaminase-dependent and -independent mechanisms. Exhibits potent antiviral activity against vif-deficient HIV-1. After the penetration of retroviral nucleocapsids into target cells of infection and the initiation of reverse transcription, it can induce the conversion of cytosine to uracil in the minus-sense single-strand viral DNA, leading to G-to-A hypermutations in the subsequent plus-strand viral DNA. The resultant detrimental levels of mutations in the proviral genome, along with a deamination- independent mechanism that works prior to the proviral integration, together exert efficient antiretroviral effects in infected target cells. Selectively targets single-stranded DNA and does not deaminate double-stranded DNA or single-or double- stranded RNA. Exhibits antiviral activity also against simian immunodeficiency viruses (SIVs), hepatitis B virus (HBV), equine infectious anemia virus (EIAV), xenotropic MuLV-related virus (XMRV) and simian foamy virus (SFV). May inhibit the mobility of LTR and non-LTR retrotransposons.


Database Links

Database Links
UniProt Q9HC16
PDB 2JYW, 2KBO, 2KEM, 3E1U, 3IQS, 3IR2, 3V4J, 3V4K
BioGrid 121920, 128319
BindingDB Q9HC16
DrugBank Not available
Guide to PHARMACOLOGY Not available
PharmGKB PA24897
KEGG hsa:60489
BioCyc Not available
Entrez Gene (GeneID) 60489

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.8356 0.0067
Accuracy 0.7594 0.0096
Sensitivity 0.7393 0.0146
Specificity 0.7826 0.0137
BEDROC 0.9502 0.005
MCC Threshold 0.562 N/A
MCC 0.5279 N/A
F-score Threshold 0.396 N/A
F-score 0.7779 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:52