TargetNet


Q92731

Estrogen receptor beta


Function

Nuclear hormone receptor. Binds estrogens with an affinity similar to that of ESR1, and activates expression of reporter genes containing estrogen response elements (ERE) in an estrogen-dependent manner. Isoform beta-cx lacks ligand binding ability and has no or only very low ere binding activity resulting in the loss of ligand-dependent transactivation ability. DNA- binding by ESR1 and ESR2 is rapidly lost at 37 degrees Celsius in the absence of ligand while in the presence of 17 beta-estradiol and 4-hydroxy-tamoxifen loss in DNA-binding at elevated temperature is more gradual.


Database Links

Database Links
UniProt Q92731
PDB 1L2J, 1NDE, 1QKM, 1U3Q, 1U3R, 1U3S, 1U9E, 1X76, 1X78, 1X7B, 1X7J, 1YY4, 1YYE, 1ZAF, 2FSZ, 2GIU, 2I0G, 2JJ3, 2NV7, 2QTU, 2YJD, 2YLY, 2Z4B, 3OLL, 3OLS, 3OMO, 3OMP, 3OMQ, 4J24, 4J26
BioGrid 108404
BindingDB Q92731
DrugBank DB01128, DB00783, DB01196, DB00481, DB00675, DB01108
Guide to PHARMACOLOGY 621
PharmGKB PA27886
KEGG hsa:2100
BioCyc Not available
Entrez Gene (GeneID) 2100

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9331 0.0016
Accuracy 0.8781 0.0024
Sensitivity 0.838 0.0031
Specificity 0.9136 0.004
BEDROC 0.967 0.0039
MCC Threshold 0.602 N/A
MCC 0.7633 N/A
F-score Threshold 0.402 N/A
F-score 0.8709 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:50