TargetNet


Q8NER1

Transient receptor potential cation channel subfamily V member 1


Function

Ligand-activated non-selective calcium permeant cation channel involved in detection of noxious chemical and thermal stimuli. Seems to mediate proton influx and may be involved in intracellular acidosis in nociceptive neurons. Involved in mediation of inflammatory pain and hyperalgesia. Sensitized by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases, which involves PKC isozymes and PCL. Can be activated by endogenous compounds, including 12- hydroperoxytetraenoic acid and bradykinin. Acts as ionotropic endocannabinoid receptor with central neuromodulatory effects. Triggers a form of long-term depression (TRPV1-LTD) mediated by the endocannabinoid anandamine in the hippocampus and nucleus accumbens by affecting AMPA receptors endocytosis (By similarity). Activation by vanilloids, like capsaicin, and temperatures higher than 42 degrees Celsius, exhibits a time- and Ca(2+)-dependent outward rectification, followed by a long-lasting refractory state. Mild extracellular acidic pH (6.5) potentiates channel activation by noxious heat and vanilloids, whereas acidic conditions (pH <6) directly activate the channel.


Database Links

Database Links
UniProt Q8NER1
PDB Not available
BioGrid 113281
BindingDB Q8NER1
DrugBank DB00132, DB00168, DB00159
Guide to PHARMACOLOGY 507
PharmGKB PA37329
KEGG hsa:7442
BioCyc Not available
Entrez Gene (GeneID) 7442

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9802 0.0028
Accuracy 0.9511 0.0035
Sensitivity 0.9428 0.0071
Specificity 0.9592 0.0021
BEDROC 0.9966 0.0023
MCC Threshold 0.476 N/A
MCC 0.9149 N/A
F-score Threshold 0.476 N/A
F-score 0.9571 N/A

Downloads

R Model Object

Random Forest model object (.RData)

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Positive Set

SMILES string + affinity value (.tsv)

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Page generated on: 2014-04-29 14:39:50