TargetNet


Q5S007

Leucine-rich repeat serine/threonine-protein kinase 2


Function

May play a role in the phosphorylation of proteins central to Parkinson disease. Phosphorylates PRDX3. May also have GTPase activity. Positively regulates autophagy through a calcium- dependent activation of the CaMKK/AMPK signaling pathway. The process involves activation of nicotinic acid adenine dinucleotide phosphate (NAADP) receptors, increase in lysosomal pH, and calcium release from lysosomes.


Database Links

Database Links
UniProt Q5S007
PDB 2ZEJ, 3D6T
BioGrid 125700
BindingDB Q5S007
DrugBank Not available
Guide to PHARMACOLOGY 2059
PharmGKB PA134968052
KEGG hsa:120892
BioCyc Not available
Entrez Gene (GeneID) 120892

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9682 0.0015
Accuracy 0.9288 0.0041
Sensitivity 0.9127 0.0073
Specificity 0.9448 0.0048
BEDROC 0.9998 4.3827 × 10-5
MCC Threshold 0.45 N/A
MCC 0.8596 N/A
F-score Threshold 0.45 N/A
F-score 0.9287 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:49