TargetNet


Q5RAG0

Histone deacetylase 1


Function

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Deacetylates SP proteins, SP1 and SP3, and regulates their function. Component of the BRG1-RB1-HDAC1 complex, which negatively regulates the CREST- mediated transcription in resting neurons. Upon calcium stimulation, HDAC1 is released from the complex and CREBBP is recruited, which facilitates transcriptional activation. Deacetylates TSHZ3 and regulates its transcriptional repressor activity. Deacetylates 'Lys-310' in RELA and thereby inhibits the transcriptional activity of NF-kappa-B. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Deacetylates NR1D2 and abrogates the effect of KAT5-mediated relieving of NR1D2 transcription repression activity (By similarity).


Database Links

Database Links
UniProt Q5RAG0
PDB Not available
BioGrid Not available
BindingDB Q5RAG0
DrugBank Not available
Guide to PHARMACOLOGY Not available
PharmGKB Not available
KEGG pon:100172663
BioCyc Not available
Entrez Gene (GeneID) 100172663

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9803 8.8332 × 10-4
Accuracy 0.9389 0.0021
Sensitivity 0.9488 0.0033
Specificity 0.9293 0.0021
BEDROC 0.9979 3.3074 × 10-4
MCC Threshold 0.416 N/A
MCC 0.8797 N/A
F-score Threshold 0.416 N/A
F-score 0.94 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:49