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Q14524

Sodium channel protein type 5 subunit alpha


Function

This protein mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient. It is a tetrodotoxin-resistant Na(+) channel isoform. This channel is responsible for the initial upstroke of the action potential. Channel inactivation is regulated by intracellular calcium levels.


Database Links

Database Links
UniProt Q14524
PDB 2KBI, 2L53, 4DCK, 4DJC
BioGrid 112236
BindingDB Q14524
DrugBank DB00868, DB01244, DB00564, DB00907, DB00527, DB00280, DB01228, DB00754, DB01195, DB01320, DB00473, DB00192, DB00555, DB00281, DB00532, DB00379, DB01388, DB00680, DB00776, DB00252, DB00750, DB01035, DB01182, DB00908, DB00740, DB01056, DB00661
Guide to PHARMACOLOGY 582
PharmGKB PA304
KEGG hsa:6331
BioCyc Not available
Entrez Gene (GeneID) 6331

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.8679 0.0086
Accuracy 0.7814 0.0111
Sensitivity 0.8434 0.0166
Specificity 0.7096 0.0186
BEDROC 0.982 0.0064
MCC Threshold 0.676 N/A
MCC 0.6029 N/A
F-score Threshold 0.402 N/A
F-score 0.8137 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:48