TargetNet


Q13547

Histone deacetylase 1


Function

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Deacetylates SP proteins, SP1 and SP3, and regulates their function. Component of the BRG1-RB1-HDAC1 complex, which negatively regulates the CREST- mediated transcription in resting neurons. Upon calcium stimulation, HDAC1 is released from the complex and CREBBP is recruited, which facilitates transcriptional activation. Deacetylates TSHZ3 and regulates its transcriptional repressor activity. Deacetylates 'Lys-310' in RELA and thereby inhibits the transcriptional activity of NF-kappa-B. Component a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Deacetylates NR1D2 and abrogates the effect of KAT5-mediated relieving of NR1D2 transcription repression activity.


Database Links

Database Links
UniProt Q13547
PDB 1TYI, 4BKX
BioGrid 109315
BindingDB Q13547
DrugBank DB02546
Guide to PHARMACOLOGY Not available
PharmGKB PA29226
KEGG hsa:3065
BioCyc Not available
Entrez Gene (GeneID) 3065

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9818 6.1675 × 10-4
Accuracy 0.9421 0.0015
Sensitivity 0.9461 0.0025
Specificity 0.9387 0.0019
BEDROC 0.9953 9.1915 × 10-4
MCC Threshold 0.442 N/A
MCC 0.8906 N/A
F-score Threshold 0.442 N/A
F-score 0.9411 N/A

Downloads

R Model Object

Random Forest model object (.RData)

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Positive Set

SMILES string + affinity value (.tsv)

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Page generated on: 2014-04-29 14:39:48