TargetNet


P49768

Presenilin-1


Function

Probable catalytic subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (beta-amyloid precursor protein). Requires the other members of the gamma-secretase complex to have a protease activity. May play a role in intracellular signaling and gene expression or in linking chromatin to the nuclear membrane. Stimulates cell-cell adhesion though its association with the E-cadherin/catenin complex. Under conditions of apoptosis or calcium influx, cleaves E-cadherin promoting the disassembly of the E-cadherin/catenin complex and increasing the pool of cytoplasmic beta-catenin, thus negatively regulating Wnt signaling. May also play a role in hematopoiesis.


Database Links

Database Links
UniProt P49768
PDB 2KR6
BioGrid 111642
BindingDB P49768
DrugBank Not available
Guide to PHARMACOLOGY 2402
PharmGKB PA33855
KEGG hsa:5663
BioCyc Not available
Entrez Gene (GeneID) 5663

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9746 0.002
Accuracy 0.9284 0.0064
Sensitivity 0.9391 0.0078
Specificity 0.9182 0.0108
BEDROC 0.9844 0.0122
MCC Threshold 0.62 N/A
MCC 0.8851 N/A
F-score Threshold 0.588 N/A
F-score 0.9391 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:41