TargetNet


P31941

DNA dC->dU-editing enzyme APOBEC-3A


Function

DNA deaminase (cytidine deaminase) with restriction activity against viruses, foreign DNA and mobility of retrotransposons. Exhibits antiviral activity against adeno- associated virus (AAV) and human T-cell leukemia virus type 1 (HTLV-1) and may inhibit the mobility of LTR and non-LTR retrotransposons. Selectively targets single-stranded DNA and can deaminate both methylcytosine and cytosine in foreign DNA. Can induce somatic hypermutation in the nuclear and mitochondrial DNA. May also play a role in the epigenetic regulation of gene expression through the process of active DNA demethylation.


Database Links

Database Links
UniProt P31941
PDB 2M65
BioGrid 128318
BindingDB P31941
DrugBank Not available
Guide to PHARMACOLOGY Not available
PharmGKB PA24891
KEGG hsa:100913187, hsa:200315
BioCyc Not available
Entrez Gene (GeneID) 100913187, 200315

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9253 0.0036
Accuracy 0.8337 0.0061
Sensitivity 0.8371 0.0091
Specificity 0.8308 0.0079
BEDROC 0.9688 0.0045
MCC Threshold 0.344 N/A
MCC 0.6753 N/A
F-score Threshold 0.344 N/A
F-score 0.8317 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:34