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P21453

Sphingosine 1-phosphate receptor 1


Function

G-protein coupled receptor for the bioactive lysosphingolipid sphingosine 1-phosphate (S1P) that seems to be coupled to the G(i) subclass of heteromeric G proteins. Signaling leads to the activation of RAC1, SRC, PTK2/FAK1 and MAP kinases. Plays an important role in cell migration, probably via its role in the reorganization of the actin cytoskeleton and the formation of lamellipodia in response to stimuli that increase the activity of the sphingosine kinase SPHK1. Required for normal chemotaxis toward sphingosine 1-phosphate. Required for normal embryonic heart development and normal cardiac morphogenesis. Plays an important role in the regulation of sprouting angiogenesis and vascular maturation. Inhibits sprouting angiogenesis to prevent excessive sprouting during blood vessel development. Required for normal egress of mature T cells from the thymus into the blood stream and into peripheral lymphoid organs. Plays a role in the migration of osteoclast precursor cells, the regulation of bone mineralization and bone homeostasis (By similarity). Plays a role in responses to oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3- phosphocholine by pulmonary endothelial cells and in the protection against ventilator-induced lung injury.


Database Links

Database Links
UniProt P21453
PDB 3V2W, 3V2Y
BioGrid 108225
BindingDB P21453
DrugBank Not available
Guide to PHARMACOLOGY 275
PharmGKB PA162402344
KEGG hsa:1901
BioCyc Not available
Entrez Gene (GeneID) 1901

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9327 0.0025
Accuracy 0.8805 0.0025
Sensitivity 0.8189 0.0031
Specificity 0.9348 0.0025
BEDROC 0.988 0.0037
MCC Threshold 0.45 N/A
MCC 0.7716 N/A
F-score Threshold 0.446 N/A
F-score 0.874 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:27