TargetNet


P15917

Lethal factor


Function

One of the three proteins composing the anthrax toxin, the agent which infects many mammalian species and that may cause death. LF is the lethal factor that, when associated with PA, causes death. LF is not toxic by itself. It is a protease that cleaves the N-terminal of most dual specificity mitogen-activated protein kinase kinases (MAPKKs or MAP2Ks) (except for MAP2K5). Cleavage invariably occurs within the N-terminal proline-rich region preceding the kinase domain, thus disrupting a sequence involved in directing specific protein-protein interactions necessary for the assembly of signaling complexes. There may be other cytosolic targets of LF involved in cytotoxicity. The proteasome may mediate a toxic process initiated by LF in the cell cytosol involving degradation of unidentified molecules that are essential for macrophage homeostasis. This is an early step in LeTx intoxication, but it is downstream of the cleavage by LF of MEK1 or other putative substrates.


Database Links

Database Links
UniProt P15917
PDB 1J7N, 1JKY, 1PWP, 1PWQ, 1PWU, 1PWV, 1PWW, 1YQY, 1ZXV, 2L0R, 3KWV, 4DV8
BioGrid Not available
BindingDB P15917
DrugBank Not available
Guide to PHARMACOLOGY Not available
PharmGKB Not available
KEGG bar:GBAA_pXO1_0172
BioCyc ANTHRA:GBAA_PXO1_0172-MONOMER, BANT261594:GJ7F-5757-MONOMER
Entrez Gene (GeneID) 1158731, 2820148, 3361711

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9112 0.0074
Accuracy 0.8383 0.0105
Sensitivity 0.8174 0.0124
Specificity 0.857 0.0151
BEDROC 0.9795 0.003
MCC Threshold 0.48 N/A
MCC 0.6762 N/A
F-score Threshold 0.48 N/A
F-score 0.8296 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:25