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P13612

Integrin alpha-4


Function

Integrins alpha-4/beta-1 (VLA-4) and alpha-4/beta-7 are receptors for fibronectin. They recognize one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. They are also receptors for VCAM1. Integrin alpha- 4/beta-1 recognizes the sequence Q-I-D-S in VCAM1. Integrin alpha- 4/beta-7 is also a receptor for MADCAM1. It recognizes the sequence L-D-T in MADCAM1. On activated endothelial cells integrin VLA-4 triggers homotypic aggregation for most VLA-4-positive leukocyte cell lines. It may also participate in cytolytic T-cell interactions with target cells.


Database Links

Database Links
UniProt P13612
PDB 3V4P, 3V4V, 4HKC
BioGrid 109883
BindingDB P13612
DrugBank DB00108
Guide to PHARMACOLOGY 2443
PharmGKB PA29940
KEGG hsa:3676
BioCyc Not available
Entrez Gene (GeneID) 3676

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9729 0.0018
Accuracy 0.927 0.0031
Sensitivity 0.9293 0.0054
Specificity 0.9244 0.0037
BEDROC 0.9963 0.0039
MCC Threshold 0.43 N/A
MCC 0.8687 N/A
F-score Threshold 0.43 N/A
F-score 0.9408 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:24