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P11387

DNA topoisomerase 1


Function

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.


Database Links

Database Links
UniProt P11387
PDB 1A31, 1A35, 1A36, 1EJ9, 1K4S, 1K4T, 1LPQ, 1NH3, 1R49, 1RR8, 1RRJ, 1SC7, 1SEU, 1T8I, 1TL8
BioGrid 113003
BindingDB P11387
DrugBank DB00762, DB04967, DB01030
Guide to PHARMACOLOGY Not available
PharmGKB PA353
KEGG hsa:7150
BioCyc Not available
Entrez Gene (GeneID) 7150

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9417 0.0043
Accuracy 0.8639 0.0073
Sensitivity 0.8699 0.0082
Specificity 0.8573 0.0127
BEDROC 0.9828 0.0146
MCC Threshold 0.706 N/A
MCC 0.7494 N/A
F-score Threshold 0.302 N/A
F-score 0.8798 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:23