TargetNet


P10276

Retinoic acid receptor alpha


Function

Receptor for retinoic acid. Retinoic acid receptors bind as heterodimers to their target response elements in response to their ligands, all-trans or 9-cis retinoic acid, and regulate gene expression in various biological processes. The RXR/RAR heterodimers bind to the retinoic acid response elements (RARE) composed of tandem 5'-AGGTCA-3' sites known as DR1-DR5. In the absence of ligand, the RXR-RAR heterodimers associate with a multiprotein complex containing transcription corepressors that induce histone acetylation, chromatin condensation and transcriptional suppression. On ligand binding, the corepressors dissociate from the receptors and associate with the coactivators leading to transcriptional activation. RARA plays an essential role in the regulation of retinoic acid-induced germ cell development during spermatogenesis. Has a role in the survival of early spermatocytes at the beginning prophase of meiosis. In Sertoli cells, may promote the survival and development of early meiotic prophase spermatocytes. In concert with RARG, required for skeletal growth, matrix homeostasis and growth plate function (By similarity). Regulates expression of target genes in a ligand- dependent manner by recruiting chromatin complexes containing KMT2E/MLL5. Mediates retinoic acid-induced granulopoiesis.


Database Links

Database Links
UniProt P10276
PDB 1DKF, 1DSZ, 3A9E, 3KMR, 3KMZ, 4DQM
BioGrid 111849
BindingDB P10276
DrugBank DB00459, DB00210, DB00523, DB00926, DB00982, DB04942, DB00799
Guide to PHARMACOLOGY 590
PharmGKB PA34225
KEGG hsa:5914
BioCyc Not available
Entrez Gene (GeneID) 5914

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9672 0.006
Accuracy 0.9219 0.0099
Sensitivity 0.9438 0.0138
Specificity 0.8979 0.0087
BEDROC 0.9978 0.0017
MCC Threshold 0.398 N/A
MCC 0.842 N/A
F-score Threshold 0.398 N/A
F-score 0.9266 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


Copyright © 2014 - 2017 TargetNet. Developed and maintained by Nan Xiao.

Page generated on: 2014-04-29 14:39:22