TargetNet


P08253

72 kDa type IV collagenase


Function

Ubiquitinous metalloproteinase that is involved in diverse functions such as remodeling of the vasculature, angiogenesis, tissue repair, tumor invasion, inflammation, and atherosclerotic plaque rupture. As well as degrading extracellular matrix proteins, can also act on several nonmatrix proteins such as big endothelial 1 and beta-type CGRP promoting vasoconstriction. Also cleaves KISS at a Gly-|-Leu bond. Appears to have a role in myocardial cell death pathways. Contributes to myocardial oxidative stress by regulating the activity of GSK3beta. Cleaves GSK3beta in vitro. Involved in the formation of the fibrovascular tissues in association with MMP14.


Database Links

Database Links
UniProt P08253
PDB 1CK7, 1CXW, 1EAK, 1GEN, 1GXD, 1HOV, 1J7M, 1KS0, 1QIB, 1RTG, 3AYU
BioGrid 110457
BindingDB P08253
DrugBank DB00786, DB00605
Guide to PHARMACOLOGY 1629
PharmGKB PA30877
KEGG hsa:4313
BioCyc MetaCyc:HS01565-MONOMER
Entrez Gene (GeneID) 4313

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9821 7.224 × 10-4
Accuracy 0.9554 0.0015
Sensitivity 0.9536 0.0024
Specificity 0.9572 0.0024
BEDROC 0.993 0.0017
MCC Threshold 0.446 N/A
MCC 0.9157 N/A
F-score Threshold 0.446 N/A
F-score 0.9581 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


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Page generated on: 2014-04-29 14:39:21