TargetNet


P07949

Proto-oncogene tyrosine-protein kinase receptor Ret


Function

Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands. Phosphorylates PTK2/FAK1. Regulates both cell death/survival balance and positional information. Required for the molecular mechanisms orchestration during intestine organogenesis; involved in the development of enteric nervous system and renal organogenesis during embryonic life, and promotes the formation of Peyer's patch-like structures, a major component of the gut- associated lymphoid tissue. Modulates cell adhesion via its cleavage by caspase in sympathetic neurons and mediates cell migration in an integrin (e.g. ITGB1 and ITGB3)-dependent manner. Involved in the development of the neural crest. Active in the absence of ligand, triggering apoptosis through a mechanism that requires receptor intracellular caspase cleavage. Acts as a dependence receptor; in the presence of the ligand GDNF in somatotrophs (within pituitary), promotes survival and down regulates growth hormone (GH) production, but triggers apoptosis in absence of GDNF. Regulates nociceptor survival and size. Triggers the differentiation of rapidly adapting (RA) mechanoreceptors. Mediator of several diseases such as neuroendocrine cancers; these diseases are characterized by aberrant integrins-regulated cell migration.


Database Links

Database Links
UniProt P07949
PDB 1XPD, 2IVS, 2IVT, 2IVU, 2IVV, 2X2K, 2X2L, 2X2M, 2X2U
BioGrid 111911
BindingDB P07949
DrugBank DB01268
Guide to PHARMACOLOGY 2185
PharmGKB PA34335
KEGG hsa:5979
BioCyc Not available
Entrez Gene (GeneID) 5979

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.8141 0.0151
Accuracy 0.7405 0.0198
Sensitivity 0.7081 0.0179
Specificity 0.7725 0.0281
BEDROC 0.9249 0.0234
MCC Threshold 0.43 N/A
MCC 0.5686 N/A
F-score Threshold 0.43 N/A
F-score 0.794 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

Download TSV


Copyright © 2014 - 2017 TargetNet. Developed and maintained by Nan Xiao.

Page generated on: 2014-04-29 14:39:20