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P04629

High affinity nerve growth factor receptor


Function

Receptor tyrosine kinase involved in the development and the maturation of the central and peripheral nervous systems through regulation of proliferation, differentiation and survival of sympathetic and nervous neurons. High affinity receptor for NGF which is its primary ligand, it can also bind and be activated by NTF3/neurotrophin-3. However, NTF3 only supports axonal extension through NTRK1 but has no effect on neuron survival. Upon dimeric NGF ligand-binding, undergoes homodimerization, autophosphorylation and activation. Recruits, phosphorylates and/or activates several downstream effectors including SHC1, FRS2, SH2B1, SH2B2 and PLCG1 that regulate distinct overlapping signaling cascades driving cell survival and differentiation. Through SHC1 and FRS2 activates a GRB2-Ras-MAPK cascade that regulates cell differentiation and survival. Through PLCG1 controls NF-Kappa-B activation and the transcription of genes involved in cell survival. Through SHC1 and SH2B1 controls a Ras- PI3 kinase-AKT1 signaling cascade that is also regulating survival. In absence of ligand and activation, may promote cell death, making the survival of neurons dependent on trophic factors.


Database Links

Database Links
UniProt P04629
PDB 1HE7, 1SHC, 1WWA, 1WWW, 2IFG, 4AOJ, 4F0I, 4GT5
BioGrid 110969
BindingDB P04629
DrugBank DB00619
Guide to PHARMACOLOGY 1817
PharmGKB PA31817
KEGG hsa:4914
BioCyc Not available
Entrez Gene (GeneID) 4914

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9629 0.0046
Accuracy 0.892 0.0063
Sensitivity 0.835 0.0103
Specificity 0.943 0.0064
BEDROC 0.9996 1.0351 × 10-4
MCC Threshold 0.492 N/A
MCC 0.7798 N/A
F-score Threshold 0.466 N/A
F-score 0.8779 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

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Page generated on: 2014-04-29 14:39:18