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O35433

Transient receptor potential cation channel subfamily V member 1


Function

Ligand-activated non-selective calcium permeant cation channel involved in detection of noxious chemical and thermal stimuli. Seems to mediate proton influx and may be involved in intracellular acidosis in nociceptive neurons. Involved in mediation of inflammatory pain and hyperalgesia. Sensitized by a phosphatidylinositol second messenger system activated by receptor tyrosine kinases, which involves PKC isozymes and PCL. Activation by vanilloids, like capsaicin, and temperatures higher than 42 degrees Celsius, exhibits a time- and Ca(2+)-dependent outward rectification, followed by a long-lasting refractory state. Mild extracellular acidic pH (6.5) potentiates channel activation by noxious heat and vanilloids, whereas acidic conditions (pH <6) directly activate the channel. Can be activated by endogenous compounds, including 12-hydroperoxytetraenoic acid and bradykinin. Acts as ionotropic endocannabinoid receptor with central neuromodulatory effects. Triggers a form of long-term depression (TRPV1-LTD) mediated by the endocannabinoid anandamine in the hippocampus and nucleus accumbens by affecting AMPA receptors endocytosis.


Database Links

Database Links
UniProt O35433
PDB 2NYJ, 2PNN, 3J5P, 3J5Q, 3J5R, 3SUI
BioGrid 249845
BindingDB O35433
DrugBank Not available
Guide to PHARMACOLOGY 507
PharmGKB Not available
KEGG rno:83810
BioCyc Not available
Entrez Gene (GeneID) 83810

Chemical Space of the Positive Compounds


Model Performance Metrics

Metric Mean Value Standard Deviation
AUC 0.9856 0.001
Accuracy 0.955 0.0021
Sensitivity 0.9557 0.0039
Specificity 0.9545 0.0015
BEDROC 0.9965 0.0024
MCC Threshold 0.418 N/A
MCC 0.9179 N/A
F-score Threshold 0.418 N/A
F-score 0.9561 N/A

Downloads

R Model Object

Random Forest model object (.RData)

Download RData

Positive Set

SMILES string + affinity value (.tsv)

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Page generated on: 2014-04-29 14:39:15