Upload files using SBG uploader — misc_upload

Upload files using SBG uploader.

misc_upload_cli(
  auth_token = NULL,
  uploader = NULL,
  file = NULL,
  project_id = NULL,
  proxy = NULL
)

Arguments

auth_token	auth token
uploader	The directory where the SBG uploader is located (the directory that contains the bin/ directory).
file	The location of the file to upload.
project_id	The project ID to upload the files to. If you do not supply this, then the uploader will place the incoming files in your "My Files" section.
proxy	Allows you to specify a proxy server through which the uploader should connect. About the details the proxy parameter format, see https://developer.sbgenomics.com/tools/uploader/documentation.

Value

The uploaded file's ID number.

References

https://developer.sbgenomics.com/tools/uploader/documentation

Examples

token = '420b4672ebfc43bab48dc0d18a32fb6f'
misc_upload_cli(auth_token = token,
                          uploader = '~/sbg-uploader/',
                          file = '~/example.fastq', project_id = '1234')
#> Error in system(command = cmd, intern = TRUE): error in running command