GSEA

ggsci.palettes

Palette functions for ggsci

This module provides palette generation functions that return colors based on the requested number and palette parameters.

pal_gsea(palette='default', n=12, alpha=1.0, reverse=False)

GSEA GenePattern color palette (continuous/diverging)

Parameters

palette : str Palette name. Currently only "default" is available. n : int Number of colors to generate. alpha : float Transparency level, between 0 and 1. reverse : bool Whether to reverse the color order.

Returns

List[str] List of hex color codes.

ggsci.scales

Plotnine scales for ggsci palettes

scale_colour_gsea = scale_color_gsea module-attribute

scale_color_gsea(palette='default', alpha=1.0, reverse=False, **kwargs)

GSEA GenePattern color scale (continuous/diverging)

Parameters

palette : str Palette name. Currently only "default" is available. alpha : float Transparency level, between 0 and 1. reverse : bool Whether to reverse the color order. **kwargs Additional arguments passed to plotnine.scale_color_gradientn.

scale_fill_gsea(palette='default', alpha=1.0, reverse=False, **kwargs)

GSEA GenePattern fill scale (continuous/diverging)

Parameters

palette : str Palette name. Currently only "default" is available. alpha : float Transparency level, between 0 and 1. reverse : bool Whether to reverse the color order. **kwargs Additional arguments passed to plotnine.scale_fill_gradientn.