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COSMIC color palettes

Source: R/discrete-cosmic.R
pal_cosmic.Rd

Color palettes inspired by the colors used in projects from the Catalogue Of Somatic Mutations in Cancers (COSMIC).

Usage

pal_cosmic(
  palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"),
  alpha = 1
)

Arguments

palette

Palette type. Currently there are three available options:

  • "signature_substitutions" (6-color palette).

  • "hallmarks_light" (10-color palette).

  • "hallmarks_dark" (10-color palette).

The "hallmarks_light" option is from Hanahan and Weinberg (2011).

alpha

Transparency level, a real number in (0, 1]. See alpha in grDevices::rgb() for details.

Author

Joshua H. Cook | joshuacook0023@gmail.com | @jhrcook

Examples

library("scales")
show_col(pal_cosmic("hallmarks_light")(10))

show_col(pal_cosmic("hallmarks_light", alpha = 0.6)(10))

show_col(pal_cosmic("hallmarks_dark")(10))

show_col(pal_cosmic("hallmarks_dark", alpha = 0.6)(10))

show_col(pal_cosmic("signature_substitutions")(6))

show_col(pal_cosmic("signature_substitutions", alpha = 0.6)(6))